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200812_mats

Analysis related to PacBio datasets.

2021_c2c12

Code used to generate the figures for our 2021 manuscript on LR-Split-seq.

210413_pgp1

Analysis of PGP1 and PGP1-derived neurons and astrocytes

210830_ucd_workshop

Code for analysis done for the 2021 UCD IsoSeq workshop

220124_swan_genpals

220310_hl60

220421_talon_debug

220512_ismb_workshop

220919_readthedocs_test

230412_lr_ss_exon_capture

230526_gencode

abacus-engine

A lightweight OpenGL engine that lets you get up and running faster

blog

ddc

Dance Dance Convolution dataset tools and models

encode_promoters

extract_explosions

Extensible and less complicated version of extract explosions

fairliereese.github.io

gseapy

Gene Set Enrichment Analysis in Python

hopper

Diverse sampling for single-cell datasets

lab_pipelines

Pipelines for analyzing data for different protocols in the Mortazavi lab

lapa

Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.

lr-splitpipe

Demultiplexing and debarcoding tool designed for LR-Split-seq data.

lrgasp-submissions

Definition and validators for LRGASP submissions

modelad_pipeline

nanosim

Nanopore sequence read simulator

paper_rnawg

Data processing scripts and figure recreation for the ENCODE4 RNA paper

protein_prediction

pyranges

Performant Pythonic GenomicRanges

python-ternary

:small_red_triangle: Ternary plotting library for python with matplotlib

rnawg