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aki-predictor

arrow-street

C++11 containers with "structures of arrays" or "arrays of structures" memory layout.

beam-road

bpmf

Julia and C++ implementations of Bayesian Probabilistic Matrix Factorization using Markov Chain Monte Carlo

bwa

Burrow-Wheeler Aligner

cl-date-time-parser

Parse date-time-string, liberally.

cl-elprep

elPrep: a high-performance tool for preparing sequencing alignment/map files in sequencing pipelines (Lisp version)

cl-elprep-mongo

elPrep-mongo is an extension of elPrep that allows for using MongoDB databases as input and/or output targets in elPrep.

cl-mongo-stream

A stream-oriented implemented of the MongoDB wire protocol for Common Lisp.

correct-platinum-fastq-sequence-identifier

Script for correcting sequence identifiers in Platinum whole genome sequences

elprep

elPrep: a high-performance tool for analyzing sequence alignment/map files in sequencing pipelines.

elprep-bench

elPrep reimplementations in C++ and Java, only for benchmark comparisons

icu72hreadmissionmimiciii

Prediction of ICU Readmissions Using Data at Patient Discharge using MIMICIII Database

pargo

A library for parallel programming in Go

process-plate

ptra

Patient Trajectory Analysis Library

severo-experiments

Experiments for the Severo.jl package

severo.jl

a software package for analysis and exploration of single-cell RNA-seq datasets

severo_jll.jl

shark

Scalable Hybrid Array Kit (Shark)

smurff

Bayesian Factorization with Side Information in C++ with Python wrapper

vms

Virtual Molecule Screening benchmark

voc-interview