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app-template

This is a template for app developers with SeqAn3. You can easily clone this repository and modify the existing code to your needs. It provides the elementary set-up for all SeqAn3 applications.

awesome-modern-cpp

A collection of resources on modern C++

b.i.o.

The Biological Input-Output library

benchmark

A microbenchmark support library

bioconda-recipes

Conda recipes for the bioconda channel.

bioconda-utils

Utilities for building and managing bioconda recipes

cache

Cache dependencies and build outputs in GitHub Actions

chopper

A tool for partitioning a set of sequences into similar batches.

chopper_old

A tool to partition a set of sequences into similar batches.

cmake-scripts

compiler-explorer

Run compilers interactively from your web browser and interact with the assembly

compiler-explorer-infra

Infrastructure to set up the public Compiler Explorer instances and compilers

conan-center-index

Recipes for the ConanCenter repository

cppcoreguidelines

The C++ Core Guidelines are a set of tried-and-true guidelines, rules, and best practices about coding in C++

cppreference-doc

C++ standard library reference

docker-languagetool

Dockerfile for LanguageTool server - configurable

doxygen

Official doxygen git repository

dream_yara

(DREAM-)Yara - An exact read mapper for very large databases with short update time

dream_yara_old

(DREAM-)Yara - An exact read mapper for very large databases with short update time

epr

fmindex-collection

ganon

a read classification tool based on Interleaved Bloom Filters

gcc-build

A script for building GCC on AMD64 platforms

hibf

HIBF and IBF

hibf_benchmarks

WIP HIBF benchmarks

homebrew-bio

:beer::microscope: Bioinformatics formulae for the Homebrew package manager (macOS and Linux)

howdesbt

Sequence Bloom Tree, supporting determined/how split filters

ibf

Interleaved Bloom Filter implementation

igenvar

The official repository for the iGenVar project.