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Name: Erik Sjölund

Type: User

Location: Stockholm, Sweden

Blog: https://stackoverflow.com/users/757777/erik-sjölund

I like discovering new things. Examples of my findings: security vulnerabilities in Kubernetes, Podman and Singularity. I've also created a SIMD algorithm that efficiently loads and shifts columns into diagonals. Here are the three first iteration steps of the algorithm:

v7 = a a a a a a a a    v0 = b b b b b b b b    v1 = c c c c c c c c
v6 =			v7 = a a a a a a a a	v0 = b b b b b b b b
v5 =			v6 =		    	v7 = a a a a a a a a
v4 =			v5 =		    	v6 =		    
v3 =         a a a a	v4 =         b b b b	v5 =         c c c c
v2 =			v3 =         a a a a	v4 =         b b b b
v1 =             a a	v2 =             b b	v3 =         a a c c
v0 =               a	v1 =             a b	v2 =           a b c

See how the diagonals fall into place.

Erik Sjölund's Projects

abi2xml

abi2xml is a command-line tool to convert an ABIF file to an XML file. ABIF files (also called ABI trace files) contain DNA sequence data and are e.g. produced by ABI PRISM TM 377 DNA sequencers. This software is written in C++ and released under the GPL license version 2.

ansible

Ansible is a radically simple IT automation platform that makes your applications and systems easier to deploy. Avoid writing scripts or custom code to deploy and update your applications— automate in a language that approaches plain English, using SSH, with no agents to install on remote systems.

ansible-role-cuda-prefix

Ansible role that installs cuda into custom folder and creates modulecmd configuration file

awesome-compose

Awesome Docker Compose samples

balsamic

Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer

build-podman

Build Podman with Github actions

buildah

A tool that facilitates building OCI images

buildkit

concurrent, cache-efficient, and Dockerfile-agnostic builder toolkit

butane

Butane translates human-readable Butane Configs into machine-readable Ignition Configs.

capnproto

Cap'n Proto serialization/RPC system

cg

Glue between Clinical Genomics apps

cka-exercises

Practice for the Certified Kubernetes Administrator (CKA) Exam

common

Location for shared common files in github.com/containers repos.

compile-time-simd-blend-mask

Compile-time blend masks that unifies _mm256_blend_epi8, _mm256_blend_epi16, _mm256_blend_epi32

composefs

a file system for mounting container images

compress-pfam-data-benchmark-zstd

Minimal benchmark test to compare zstd (zstandard) compression with gzip for the datafile Pfam-A.full.gz

container-cxx-compiler-debian-experimental

Dockerfiles for C++ compilers from the repository Debian experimental (gcc and clang)

coreos-installer

Installer for CoreOS disk images

create-fcos-iso-with-ssh-key

Bash script to create a Fedora CoreOS live iso customized with your SSH public key. Docker or Podman is used in the script.

cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

crun

A fast and lightweight fully featured OCI runtime and C library for running containers

cryoem-ansible

cufflinks-ubuntu-singularity-container

Documentation of how to create an Ubuntu singularity container with cufflinks installed

curl

A command line tool and library for transferring data with URL syntax, supporting DICT, FILE, FTP, FTPS, GOPHER, GOPHERS, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, MQTT, POP3, POP3S, RTMP, RTMPS, RTSP, SCP, SFTP, SMB, SMBS, SMTP, SMTPS, TELNET, TFTP, WS and WSS. libcurl offers a myriad of powerful features

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