erikakvalem Goto Github PK

atlas_protocol

A computational protocol for atlas-level data integration and analysis as performed in Salcher et al. (2022).

buisciii-tools

current-topics-bioinformatics-lecture

differentialabundance

Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

documentation-2018-mkdocs

duszka_2024

Bulk RNA-sequencing analysis in mice CR NB (Caloric restriction with No Bedding)

eda_genomeanalysis

23andme and Myheritage genoma analysis

ena-upload-cli

ENA upload tool - script your Open Data upload to the European Nucleotide Archive

gitworkshop

Following TheBridge Git workshop & terminal commands use

machine-learning-classification

The work of my Msc thesis. Developing a Machine Learning Model for classification of Customer Support Request at Ericsson

microbial_metabolites_2021

Bulk RNA-seq analysis of mourine organoids and in vivo CD8+ sorted single-cell RNA seq analysis

ml_drug_discovery

PROYECTO DE BIOINFORMÁTICA – DESARROLLO COMPUTACIONAL DE FÁRMACOS

monkey-pox-str

Moneky Pox STR clustering

next_cmscaller

Nextflow pipeline to run CMScaller R package from single cell adata object

nf-deseq2

A RNA-seq differential expression analysis pipeline downstream of nf-core/rnaseq.

nsclc_gender_2023

Gender analysis of single-cell atlas non-small cell lung cancer

relecov-platform

Clone repository for hackathon

relecov-tools

relecov_biohackaton

Documentation on the progress from group 2

relecov_qc_exercise

shell_intro_for_bioinformatics_stg

Intro to Shell for Bioinformatics - with STG examples

single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

useful_functions

Repetitive code and useful functions to have on hand.

viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples