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2019organizationaldocs

notes and documents for 2019 Workshop

academic-kickstart

Easily create a beautiful website using Academic and Hugo

ada2022_machine-learningdivrate

Repository for ADA E., Knyshov, A., Schwartz R. “Testing divergence-time utility of simulated and machine-learning filtered phylogenomic datasets.

ada_2022_bayesiandivrate

ada_etal_2022_aviansisrs

Scripts and supplementary documents for Ada et al. 2021

bio103r

Bio 103 and 104 Labs in R at URI

bio104

Bio104 R Material

bird_sisrs

48 bird genome data prep steps & scripts

chapter2

developr

NantucketExerciseGitRepo

divrate

Chapter2 scripts

erenada.github.io

ggnetworx

phylogenetic networks using ggplot2 and ggtree

immgen-jamboree

intro-r-imm

Materials for Systems Immunology R Bootcamp Fall 2023

ncov

Nextstrain build for novel coronavirus (nCoV)

pipeline_metagenomics-midasdb

GitHub repository for the project "Metagenomic analysis to identify gene clusters associated with IgA production"

pipeline_phylogenize-mouse-imgmc

modified R package "phylogenize" to be run with custom-made mouse focused MIDAS2 database.

rboretum

revbayes

rna-seek

A comprehensive quality-control and quantification RNA-seq pipeline

schwartzlaburi.github.io

sisrs

This project identifies phylogenetically informative sites from next-generation whole-genome sequencing of multiple species. It is able to identify homologous sites without the need to do de novo assembly, annotation, and alignment.

sisrstrees

slide_seq_project

sra_read_downloader

A handy script for downloading reads from any kind of accession from the SRA.

tanggle

phylogenetic networks using ggplot2 and ggtree