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brateval

This tool performs pairwise comparison of brat annotation sets done on the same set of documents.

chemspot

ChemSpot is a named entity recognition tool for identifying mentions of chemicals in natural language texts, including trivial names, drugs, abbreviations, molecular formulas and IUPAC entities. Since the different classes of relevant entities have rather different naming characteristics, ChemSpot uses a hybrid approach combining a Conditional Random Field with a dictionary. ChemSpot is released under the Common Public License 1.0.

fimda

UIMA wrapper for SETH with docker container and webservice

generatemutationdata

geolocation

Geolocation prediction for a given Tweet

mirner

mirNer detects microRna mentions

mutation-ner

Named entity recognition of mutation mentions using transformer based models

mutationcorpora

Publicly available mutation corpora

ner_huggingface

Named Entity Recognition using huggingface

ner_lstm

Named Entity Recognition using LSTM/CRF in Keras

refseqrecognizer

rpi-jukebox-rfid

A Raspberry Pi jukebox, playing local music, podcasts and web radio, streams and spotify triggered by RFID cards and/or web app. All plug and play via USB. GPIO scripts available.

sia

SIA is an annotation service according to the BioCreative V.5. BeCalm task TIPS. Annotations for mutation mentions are generated using SETH, mirNer, and diseases using a dictionary lookup. Results are returned in JSON according to these definitions.