epongpipat Goto Github PK

afni

Official AFNI source and documentation

afnir

Wrapper Functions for 'AFNI' software in R

alabaster

Lightweight, configurable Sphinx theme. Now the Sphinx default!

bashhelperkennedyrodrigue

bids-examples

A set of BIDS compatible datasets with empty nifti files that can be used for testing software.

bookdown-demo

A minimal book example using bookdown

bookdown.org

Source documents to generate the bookdown.org website

boot-perm-apa

Book about creating a more informative APA statement by including and covering R^2 confidence intervals (CI), bootstrap CI, and permuted p-values

bootpermbroom

A package to permute and bootstrap an analysis using lm and append useful statistics to a tidy table

compare_nii_gif

convert-mri_study-pams

covid-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

covid19

covid-19 repository for family

covid19-shinydashboard

COVID-19 Shiny Dashboard for Regions that I Consistently Check

eepr

common functions that I use

epongpipat

epongpipat.github.io

My personal website

fmriflows

fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.

fsl_fix

FMRIB's ICA-based Xnoiseifier

ggbrain

Helper functions for making brain image figures with ggplot

ggsegextra

Repository for extra atlases for the ggseg-package

git_github_workshop

git/github workshop at CVL/UTD - Fall 2019 / heavily borrowing from https://swcarpentry.github.io/git-novice

ironsmithqsm

Ironsmith is a comprehensive, fully automated pipeline for creating and processing Quantitative Susceptibility Maps (QSM), extracting QSM based iron concentrations from subcortical and cortical brain regions and evaluating the quality of QSM data using SNR measures and assessment of outlier regions on phase images.

kennedy-rodrigue-wiki

longcombat

R package to implement longitudinal ComBat: A method for harmonizing multi-batch longitudinal data

march-madness-2019

multishell-qspace-gradients

Generate a ready-to-import gradient table for a multi-shell DWI acquisition using Emmanuel Caruyer et al., 2013 uniform schemes in a Siemens scanner.

ppi

Package to perform Psychophysiological Interaction (PPI) analyses

pyhelperkennedyrodrigue

r-for-brain-network

Analyze brain surface/volume (gifti, cifti, nifti) in R and extract networks