Unable to install pip ARM64 Mac about tpot

[aayest]

Okay, that worked ! Thanks Pedro. AA __ Alejandro Ayestaran ***@***.***

…

On Dec 8, 2023, at 4:43 PM, Pedro Ribeiro ***@***.***> wrote: to install via conda, you need to include the conda-forge channel. Here is the command: conda install -c conda-forge tpot — Reply to this email directly, view it on GitHub <#1334 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/BBUIC5BF5CLYLO6FNEZCYM3YIOJYHAVCNFSM6AAAAABAG4Z5C6VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQNBXHEZTENBQHA>. You are receiving this because you authored the thread.

[perib]

I do not have a mac with the new processors, but I'll ask people on the team who do to test this out.

In the meantime you could try the next version of TPOT, TPOT2 which can be found here: https://github.com/EpistasisLab/tpot2

This version does not use the deap package and has been working for people on our team with newer Macs.

[perib]

We were able to install this on a Mac with the new processor.

I would recommend trying to install Deap/tpot using conda rather than pip.

[aayest]

I wonder who did you make this work? Last login: Thu Dec 7 20:09:33 on ttys000 (base) ***@***.*** ~ % conda install tpot Collecting package metadata (current_repodata.json): done Solving environment: unsuccessful initial attempt using frozen solve. Retrying with flexible solve. Collecting package metadata (repodata.json): done Solving environment: unsuccessful initial attempt using frozen solve. Retrying with flexible solve. PackagesNotFoundError: The following packages are not available from current channels: - tpot Current channels: - https://repo.anaconda.com/pkgs/main/osx-arm64 - https://repo.anaconda.com/pkgs/main/noarch - https://repo.anaconda.com/pkgs/r/osx-arm64 - https://repo.anaconda.com/pkgs/r/noarch To search for alternate channels that may provide the conda package you're looking for, navigate to https://anaconda.org and use the search bar at the top of the page. (base) ***@***.*** ~ % pip install tpot Collecting tpot Using cached TPOT-0.12.1-py3-none-any.whl.metadata (2.0 kB) Requirement already satisfied: numpy>=1.16.3 in ./anaconda3/lib/python3.11/site-packages (from tpot) (1.23.5) Requirement already satisfied: scipy>=1.3.1 in ./anaconda3/lib/python3.11/site-packages (from tpot) (1.11.1) Requirement already satisfied: scikit-learn>=0.22.0 in ./anaconda3/lib/python3.11/site-packages (from tpot) (1.3.0) Collecting deap>=1.2 (from tpot) Using cached deap-1.4.1.tar.gz (1.1 MB) Preparing metadata (setup.py) ... done Collecting update-checker>=0.16 (from tpot) Using cached update_checker-0.18.0-py3-none-any.whl (7.0 kB) Requirement already satisfied: tqdm>=4.36.1 in ./anaconda3/lib/python3.11/site-packages (from tpot) (4.65.0) Collecting stopit>=1.1.1 (from tpot) Using cached stopit-1.1.2-py3-none-any.whl Requirement already satisfied: pandas>=0.24.2 in ./anaconda3/lib/python3.11/site-packages (from tpot) (2.0.3) Requirement already satisfied: joblib>=0.13.2 in ./anaconda3/lib/python3.11/site-packages (from tpot) (1.2.0) Requirement already satisfied: xgboost>=1.1.0 in ./anaconda3/lib/python3.11/site-packages (from tpot) (1.7.3) Requirement already satisfied: python-dateutil>=2.8.2 in ./anaconda3/lib/python3.11/site-packages (from pandas>=0.24.2->tpot) (2.8.2) Requirement already satisfied: pytz>=2020.1 in ./anaconda3/lib/python3.11/site-packages (from pandas>=0.24.2->tpot) (2023.3.post1) Requirement already satisfied: tzdata>=2022.1 in ./anaconda3/lib/python3.11/site-packages (from pandas>=0.24.2->tpot) (2023.3) Requirement already satisfied: threadpoolctl>=2.0.0 in ./anaconda3/lib/python3.11/site-packages (from scikit-learn>=0.22.0->tpot) (2.2.0) Requirement already satisfied: requests>=2.3.0 in ./anaconda3/lib/python3.11/site-packages (from update-checker>=0.16->tpot) (2.31.0) Requirement already satisfied: six>=1.5 in ./anaconda3/lib/python3.11/site-packages (from python-dateutil>=2.8.2->pandas>=0.24.2->tpot) (1.16.0) Requirement already satisfied: charset-normalizer<4,>=2 in ./anaconda3/lib/python3.11/site-packages (from requests>=2.3.0->update-checker>=0.16->tpot) (2.0.4) Requirement already satisfied: idna<4,>=2.5 in ./anaconda3/lib/python3.11/site-packages (from requests>=2.3.0->update-checker>=0.16->tpot) (3.4) Requirement already satisfied: urllib3<3,>=1.21.1 in ./anaconda3/lib/python3.11/site-packages (from requests>=2.3.0->update-checker>=0.16->tpot) (1.26.16) Requirement already satisfied: certifi>=2017.4.17 in ./anaconda3/lib/python3.11/site-packages (from requests>=2.3.0->update-checker>=0.16->tpot) (2023.11.17) Using cached TPOT-0.12.1-py3-none-any.whl (87 kB) Building wheels for collected packages: deap Building wheel for deap (setup.py) ... error error: subprocess-exited-with-error × python setup.py bdist_wheel did not run successfully. │ exit code: 1 ╰─> [133 lines of output] running bdist_wheel running build running build_py creating build creating build/lib.macosx-11.1-arm64-cpython-311 creating build/lib.macosx-11.1-arm64-cpython-311/deap copying deap/cma.py -> build/lib.macosx-11.1-arm64-cpython-311/deap copying deap/algorithms.py -> build/lib.macosx-11.1-arm64-cpython-311/deap copying deap/gp.py -> build/lib.macosx-11.1-arm64-cpython-311/deap copying deap/__init__.py -> build/lib.macosx-11.1-arm64-cpython-311/deap copying deap/creator.py -> build/lib.macosx-11.1-arm64-cpython-311/deap copying deap/base.py -> build/lib.macosx-11.1-arm64-cpython-311/deap creating build/lib.macosx-11.1-arm64-cpython-311/deap/tools copying deap/tools/emo.py -> build/lib.macosx-11.1-arm64-cpython-311/deap/tools copying deap/tools/constraint.py -> build/lib.macosx-11.1-arm64-cpython-311/deap/tools copying deap/tools/support.py -> build/lib.macosx-11.1-arm64-cpython-311/deap/tools copying deap/tools/mutation.py -> build/lib.macosx-11.1-arm64-cpython-311/deap/tools copying deap/tools/indicator.py -> build/lib.macosx-11.1-arm64-cpython-311/deap/tools copying deap/tools/__init__.py -> build/lib.macosx-11.1-arm64-cpython-311/deap/tools copying deap/tools/crossover.py -> build/lib.macosx-11.1-arm64-cpython-311/deap/tools copying deap/tools/selection.py -> build/lib.macosx-11.1-arm64-cpython-311/deap/tools copying deap/tools/init.py -> build/lib.macosx-11.1-arm64-cpython-311/deap/tools copying deap/tools/migration.py -> build/lib.macosx-11.1-arm64-cpython-311/deap/tools creating build/lib.macosx-11.1-arm64-cpython-311/deap/benchmarks copying deap/benchmarks/binary.py -> build/lib.macosx-11.1-arm64-cpython-311/deap/benchmarks copying deap/benchmarks/gp.py -> build/lib.macosx-11.1-arm64-cpython-311/deap/benchmarks copying deap/benchmarks/tools.py -> build/lib.macosx-11.1-arm64-cpython-311/deap/benchmarks copying deap/benchmarks/__init__.py -> build/lib.macosx-11.1-arm64-cpython-311/deap/benchmarks copying deap/benchmarks/movingpeaks.py -> build/lib.macosx-11.1-arm64-cpython-311/deap/benchmarks creating build/lib.macosx-11.1-arm64-cpython-311/deap/tools/_hypervolume copying deap/tools/_hypervolume/__init__.py -> build/lib.macosx-11.1-arm64-cpython-311/deap/tools/_hypervolume copying deap/tools/_hypervolume/pyhv.py -> build/lib.macosx-11.1-arm64-cpython-311/deap/tools/_hypervolume running build_ext building 'deap.tools._hypervolume.hv' extension creating build/temp.macosx-11.1-arm64-cpython-311 creating build/temp.macosx-11.1-arm64-cpython-311/deap creating build/temp.macosx-11.1-arm64-cpython-311/deap/tools creating build/temp.macosx-11.1-arm64-cpython-311/deap/tools/_hypervolume clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/aa/anaconda3/include -arch arm64 -fPIC -O2 -isystem /Users/aa/anaconda3/include -arch arm64 -I/Users/aa/anaconda3/include/python3.11 -c deap/tools/_hypervolume/_hv.c -o build/temp.macosx-11.1-arm64-cpython-311/deap/tools/_hypervolume/_hv.o clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/aa/anaconda3/include -arch arm64 -fPIC -O2 -isystem /Users/aa/anaconda3/include -arch arm64 -I/Users/aa/anaconda3/include/python3.11 -c deap/tools/_hypervolume/hv.cpp -o build/temp.macosx-11.1-arm64-cpython-311/deap/tools/_hypervolume/hv.o clang++ -bundle -undefined dynamic_lookup -Wl,-rpath,/Users/aa/anaconda3/lib -L/Users/aa/anaconda3/lib -Wl,-rpath,/Users/aa/anaconda3/lib -L/Users/aa/anaconda3/lib build/temp.macosx-11.1-arm64-cpython-311/deap/tools/_hypervolume/_hv.o build/temp.macosx-11.1-arm64-cpython-311/deap/tools/_hypervolume/hv.o -o build/lib.macosx-11.1-arm64-cpython-311/deap/tools/_hypervolume/hv.cpython-311-darwin.so ld: warning: duplicate -rpath '/Users/aa/anaconda3/lib' ignored /Users/aa/anaconda3/lib/python3.11/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() installing to build/bdist.macosx-11.1-arm64/wheel running install running install_lib creating build/bdist.macosx-11.1-arm64 creating build/bdist.macosx-11.1-arm64/wheel creating build/bdist.macosx-11.1-arm64/wheel/deap copying build/lib.macosx-11.1-arm64-cpython-311/deap/cma.py -> build/bdist.macosx-11.1-arm64/wheel/deap creating build/bdist.macosx-11.1-arm64/wheel/deap/tools copying build/lib.macosx-11.1-arm64-cpython-311/deap/tools/emo.py -> build/bdist.macosx-11.1-arm64/wheel/deap/tools copying build/lib.macosx-11.1-arm64-cpython-311/deap/tools/constraint.py -> build/bdist.macosx-11.1-arm64/wheel/deap/tools copying build/lib.macosx-11.1-arm64-cpython-311/deap/tools/support.py -> build/bdist.macosx-11.1-arm64/wheel/deap/tools copying build/lib.macosx-11.1-arm64-cpython-311/deap/tools/mutation.py -> build/bdist.macosx-11.1-arm64/wheel/deap/tools copying build/lib.macosx-11.1-arm64-cpython-311/deap/tools/indicator.py -> build/bdist.macosx-11.1-arm64/wheel/deap/tools copying build/lib.macosx-11.1-arm64-cpython-311/deap/tools/__init__.py -> build/bdist.macosx-11.1-arm64/wheel/deap/tools creating build/bdist.macosx-11.1-arm64/wheel/deap/tools/_hypervolume copying build/lib.macosx-11.1-arm64-cpython-311/deap/tools/_hypervolume/__init__.py -> build/bdist.macosx-11.1-arm64/wheel/deap/tools/_hypervolume copying build/lib.macosx-11.1-arm64-cpython-311/deap/tools/_hypervolume/hv.cpython-311-darwin.so -> build/bdist.macosx-11.1-arm64/wheel/deap/tools/_hypervolume copying build/lib.macosx-11.1-arm64-cpython-311/deap/tools/_hypervolume/pyhv.py -> build/bdist.macosx-11.1-arm64/wheel/deap/tools/_hypervolume copying build/lib.macosx-11.1-arm64-cpython-311/deap/tools/crossover.py -> build/bdist.macosx-11.1-arm64/wheel/deap/tools copying build/lib.macosx-11.1-arm64-cpython-311/deap/tools/selection.py -> build/bdist.macosx-11.1-arm64/wheel/deap/tools copying build/lib.macosx-11.1-arm64-cpython-311/deap/tools/init.py -> build/bdist.macosx-11.1-arm64/wheel/deap/tools copying build/lib.macosx-11.1-arm64-cpython-311/deap/tools/migration.py -> build/bdist.macosx-11.1-arm64/wheel/deap/tools copying build/lib.macosx-11.1-arm64-cpython-311/deap/algorithms.py -> build/bdist.macosx-11.1-arm64/wheel/deap copying build/lib.macosx-11.1-arm64-cpython-311/deap/gp.py -> build/bdist.macosx-11.1-arm64/wheel/deap copying build/lib.macosx-11.1-arm64-cpython-311/deap/__init__.py -> build/bdist.macosx-11.1-arm64/wheel/deap creating build/bdist.macosx-11.1-arm64/wheel/deap/benchmarks copying build/lib.macosx-11.1-arm64-cpython-311/deap/benchmarks/binary.py -> build/bdist.macosx-11.1-arm64/wheel/deap/benchmarks copying build/lib.macosx-11.1-arm64-cpython-311/deap/benchmarks/gp.py -> build/bdist.macosx-11.1-arm64/wheel/deap/benchmarks copying build/lib.macosx-11.1-arm64-cpython-311/deap/benchmarks/tools.py -> build/bdist.macosx-11.1-arm64/wheel/deap/benchmarks copying build/lib.macosx-11.1-arm64-cpython-311/deap/benchmarks/__init__.py -> build/bdist.macosx-11.1-arm64/wheel/deap/benchmarks copying build/lib.macosx-11.1-arm64-cpython-311/deap/benchmarks/movingpeaks.py -> build/bdist.macosx-11.1-arm64/wheel/deap/benchmarks copying build/lib.macosx-11.1-arm64-cpython-311/deap/creator.py -> build/bdist.macosx-11.1-arm64/wheel/deap copying build/lib.macosx-11.1-arm64-cpython-311/deap/base.py -> build/bdist.macosx-11.1-arm64/wheel/deap running install_egg_info running egg_info writing deap.egg-info/PKG-INFO writing dependency_links to deap.egg-info/dependency_links.txt writing requirements to deap.egg-info/requires.txt writing top-level names to deap.egg-info/top_level.txt reading manifest file 'deap.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.hpp' under directory 'deap' warning: no files found matching '*.h' under directory 'examples' no previously-included directories found matching 'doc/_build' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE.txt' writing manifest file 'deap.egg-info/SOURCES.txt' Copying deap.egg-info to build/bdist.macosx-11.1-arm64/wheel/deap-1.4.1-py3.11.egg-info running install_scripts Traceback (most recent call last): File "<string>", line 2, in <module> File "<pip-setuptools-caller>", line 34, in <module> File "/private/var/folders/js/ftcwjzw169b5lwlcwmwrnv640000gn/T/pip-install-e452kuqm/deap_166390cb0d4c47a2baf2fe5a6e973c89/setup.py", line 93, in <module> run_setup(True) File "/private/var/folders/js/ftcwjzw169b5lwlcwmwrnv640000gn/T/pip-install-e452kuqm/deap_166390cb0d4c47a2baf2fe5a6e973c89/setup.py", line 63, in run_setup setup(name='deap', File "/Users/aa/anaconda3/lib/python3.11/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Users/aa/anaconda3/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) ^^^^^^^^^^^^^^^^^^ File "/Users/aa/anaconda3/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/Users/aa/anaconda3/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/Users/aa/anaconda3/lib/python3.11/site-packages/setuptools/dist.py", line 1234, in run_command super().run_command(command) File "/Users/aa/anaconda3/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/Users/aa/anaconda3/lib/python3.11/site-packages/wheel/bdist_wheel.py", line 328, in run impl_tag, abi_tag, plat_tag = self.get_tag() ^^^^^^^^^^^^^^ File "/Users/aa/anaconda3/lib/python3.11/site-packages/wheel/bdist_wheel.py", line 278, in get_tag assert tag in supported_tags, "would build wheel with unsupported tag {}".format(tag) ^^^^^^^^^^^^^^^^^^^^^ AssertionError: would build wheel with unsupported tag ('cp311', 'cp311', 'macosx_11_1_arm64') [end of output] note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for deap Running setup.py clean for deap Failed to build deap ERROR: Could not build wheels for deap, which is required to install pyproject.toml-based projects (base) ***@***.*** ~ % Are you sure you are using an ARM Mac? (base) ***@***.*** ~ % uname -a Darwin Alejandros-MacBook-Pro.local 23.1.0 Darwin Kernel Version 23.1.0: Mon Oct 9 21:28:45 PDT 2023; root:xnu-10002.41.9~6/RELEASE_ARM64_T6020 arm64 Thanks, AA __ Alejandro Ayestaran ***@***.***

…

On Dec 8, 2023, at 3:38 PM, Pedro Ribeiro ***@***.***> wrote: We were able to install this on a Mac with the new processor. I would recommend trying to install Deap/tpot using conda rather than pip. — Reply to this email directly, view it on GitHub <#1334 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/BBUIC5GY7OXZWBERT4YHMTTYIOCDTAVCNFSM6AAAAABAG4Z5C6VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQNBXHA3TEOJWGE>. You are receiving this because you authored the thread.

[perib]

to install via conda, you need to include the conda-forge channel.

Here is the command:

conda install -c conda-forge tpot