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bioconda-recipes

Conda recipes for the bioconda channel.

bioperl-live

Core BioPerl 1.x code

eg-web-common

modules/files required to set up any of the EG genome browsers

ens-lgil.github.io

Test for a replacement of the LRG website

ens_scripts

Repository to store some experimental scripts

ensembl

The Ensembl Core Perl API and SQL schema

ensembl-io

File parsing and writing code for Ensembl

ensembl-production

Ensembl Production code

ensembl-rest

Language agnostic RESTful data access to Ensembl data over HTTP

ensembl-variation

The Ensembl Variation Perl API and SQL schema

ensembl-vep

The Variant Effect Predictor predicts the functional effects of genomic variants

ensembl-webcode

The code to run an Ensembl website

ensj-healthcheck

Ensembl's Automated QC Framework

genoverse

HTML5 scrollable genome browser

goci

GWAS Catalog Ontology and Curation Infrastructure

gwas-sumstats-validator

GWAS Summary Statistics File Validator

omicspred

Source codes for the OmicsPred.org site

pgs-harmonizer

A pipeline to format and harmonise Polygenic Score (PGS) Catalog Scoring Files within and between different genome builds.

pgs_catalog

An open database of polygenic scores and relevant metadata needed to apply and evaluate them correctly.

pgs_d3

pgs_harmonizedfile_validator

Format and data validator for the PGS Catalog Harmonized Scoring files

pgs_metadata_exports

Package to export PGS Catalog metadata

pgs_scoringfile_validator

Formatting and harmonising scripts for summary statistics data that will be imported into the summary statistics database

pgs_template_validator

Standalone Python validator for the PGS Catalog Curation Template (Metadata)

pgs_variants_coords

Repository to fetch and store the variant locations from Polygenic Score files, using their rsIDs

pgsc_calc

The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation

pgscatalog_utils

Utilities for working with PGS Catalog API and scoring files

public-plugins

Plugins for an Ensembl website

scoring_files_pipeline

Pipeline to manage and harmonize the PGS Catalog scoring files

test-vep-readthedocs