Henry Webel's Projects
ALD study data analysis
A modular, python-based framework for mass spectrometry. Powered by nbdev.
A Transformer Architecture Based on BERT and 2D Convolutional Neural Network to Identify DNA Enhancers from Sequence Information
Generating biologically informed neural networks
Analysis, Paper, Presentation for thesis on Variational Inference and Bayesian Multiple Task Multiple Kernel Learning (BMTMKL), applied to predict efficiency of cancer drugs using genetic information of breast cancer cell lines.
Information for starting in the Copenhagen Bioscience PhD Program
Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge discovery making use of all the information contained in the graph
Samples for Google Cloud Machine Learning Engine
My profile.
An example Hydra app ๐งช
The fastai book, published as Jupyter Notebooks
Introduction to Data Science Processes and how to do this with Google Cloud ML-Engine
Add social media icons to your GitHub README files.
A toolbox to iNNvestigate neural networks' predictions!
"Deep Generative Modeling": Introductory Examples
This repository contains an open-source Jekyll theme for authoring and publishing technical documentation. This theme is used by Appstore/Alexa tech writers and other community members. Most of the theme's files are stored in a Ruby Gem (called jekyll-doc-project).
Tutorial on jupytext, VSCode, Jupyter and related stack (interactive)
Deep Learning for humans
Speaker slides from monthly meetups and conference
mRMR (minimum-Redundancy-Maximum-Relevance) for automatic feature selection at scale.
Multiple Testing examples from Giacomo Vianello.
MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations
Postprocessing of markdown files resulting from jupyter nbconvert to be uploaded to github (gists).
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
๐ Parameterize, execute, and analyze notebooks
Proteomics Method Club - Interactive Data Visualization with Jupyter Notebook and Dash App using Python
Examples and exercises for Publishing Python Packages from Manning Books ๐ ๐ฆ โฌ๏ธ
notebooks and data for my presentation at PyPharma2019