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Amplicon sequencing analysis workflow using DADA2 and QIIME2
Applied Computational Genomics Course at UU: Spring 2020
Genome annotation with AUGUSTUS
Environmental DNA metabarcoding taxonomic identification
bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.
Bioinformatics data analysis and visualization toolkit
Bitácoras y archivos
Curso "Secuenciación masiva y anotación de genes" UAM-Iztapalaoa
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes
This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequences.
Pratical to learn basic Biopython usage
Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
exp2GO is a novel method for the computational prediction of gene function annotations
Workflows for germline short variant discovery with GATK4
Python scripts to find enrichment of GO terms
Annotate DNA sequences for Gene Ontology terms
Docker Image for Michigan Imputation Server
r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
🐋 The Living Oceans Metagenome Taxanomic Profiling tool (beta) is a metagenomic pipeine built to work on your local ocean
Metagenomic binning based on Hi-C data
MetaWorks is a flexible multi-marker metabarcode pipeline for processing paired-end Illumina reads from raw fastq.gz files to taxonomic assignments.
Cross-disease comparison of case-control gut microbiome studies
NanoDJ: A Dockerized Jupyter Notebook for Interactive Oxford Nanopore MinION Sequence Manipulation and Genome Assembly
NOVOPlasty - The organelle assembler and heteroplasmy caller
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.