Comments (4)
- building a developer community around the soon to be open sources bio.tools project (and friends)
- Governance
- Contributing
- Code of Conduct
- How to integrate crawling and pulling data into bio.tools
- can we build a plugin-mechanism, so that other communities can write crawlers and annotate tools automatically
- Reviewing all issues and prioritize them
from biohackathon.
heads up @hmenager @matuskalas @hansioan @piotrgithub1 @khillion @Ahto123 @krab1k @albangaignard @magnuspalmblad @annalenalamprecht @veitveit @jaanisoe @bgruening
the outline of the sessions is done:
https://github.com/elixir-europe/BioHackathon/tree/master/tools/bio.tools%20%26%20EDAM%20drop-in%20hackathon%20%26%20discussions
hope to see some of you there
I included your suggestions Bjoern (2 as hacking topics, one as a "maybe")
from biohackathon.
@joncison will you be looking to
- Expose Bioschemas markup through bio.tools
- Ingest Bioschemas markup for creating a new entry
- Generate Bioschemas markup for inclusion on a tool's own web page
from biohackathon.
probably not during the hackathon
In the longer term, 1. and 3. for sure, sooner rather than later assuming the Bioschema tool spec is a subset of the biotoolsSchema JSON-LD / RDF-XML serialisation that is already in the pipe (cc @albangaignard @matuskalas) : ensuring this happens is much easier if I'm leading the Bioschema tool spec activity (as proposed by @rajido, which I'd be happy to do)
2. is a longer-term thing for various reasons
from biohackathon.
Related Issues (14)
- figure out internationalization and localization in JSON-LD for Bioschemas HOT 1
- talk with Leyla on ProteinStructure and ProteinAnnotation (a model)
- Discussion on introducing Compact Identifiers as Bioschemas type HOT 3
- Discuss with Chris adoption of short identifiers with publishers HOT 5
- implement MolecularEntity in ChEMBL HOT 3
- Write up a proposal for ChemicalSubstance HOT 1
- Can Bioschemas point to RDF of the entity it describes? HOT 5
- Get AMBIT (data.enanomapper.net) listed as Deployment on Bioschemas page HOT 2
- Develop ShEx for MolecularEntity HOT 3
- Add dataset markup for ChEMBL HOT 3
- Feedback for chemical substance HOT 1
- discuss SMILES in MolecularEntity JSON-LD which requires escaping HOT 5
- make a Bioschemas example for HMDB HOT 1
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from biohackathon.