Comments (10)
#18 (comment) should say dcmdjpeg (not dcmjpeg).
Before:
dicom2mesh -i . -v
Read DICOM images located under .
ERROR: In /build/vtk7-d8SNZg/vtk7-7.1.1+dfsg1/IO/Image/vtkDICOMImageReader.cxx, line 105
vtkDICOMImageReader (0x55cb89114650): DICOMParser couldn't parse : ./conv
Progress: 0.0%ERROR: In /build/vtk7-d8SNZg/vtk7-7.1.1+dfsg1/IO/Image/vtkDICOMImageReader.cxx, line 333
vtkDICOMImageReader (0x55cb89114650): There was a problem retrieving data from: ./0196.dcm
ERROR: In /build/vtk7-d8SNZg/vtk7-7.1.1+dfsg1/Common/ExecutionModel/vtkExecutive.cxx, line 784
vtkCompositeDataPipeline (0x55cb891152f0): Algorithm vtkDICOMImageReader(0x55cb89114650) returned failure for request: vtkInformation (0x55cb89120710)
after:
apt install dcmtk
mkdir conv
for x (*.dcm) { dcmdjpeg -v $x conv/$x }
cd conv
dicom2mesh -i . -v
(success)
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These dicom files are compressed. With the dicom2mesh build from the ppa you cannot read compressed files. There are two ways:
- Building Dicom2Mesh yourself by considering following issue #14 (comment)
- Uncompress the files using tools, such as dcmtk
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I got error on build vtk-dicom (#14 (comment)):
By not providing "FindVTK.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "VTK", but
CMake did not find one.
Could not find a package configuration file provided by "VTK" with any of
the following names:
VTKConfig.cmake
vtk-config.cmake
Add the installation prefix of "VTK" to CMAKE_PREFIX_PATH or set "VTK_DIR"
to a directory containing one of the above files. If "VTK" provides a
separate development package or SDK, be sure it has been installed.
and I got install dcmtk but after install the system not recognize it, is like not are installed.
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from dicomtomesh.
Good morning,
There is no binary named dcmtk. What you are interested in is the command dcmjpeg. This came with dcmtk on your system.
About the cmake error: You need to read the build instructions. In this case the VTK_DIR is not set. Please see this and that
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Waht I pretend is generate 3D object to render with javascript
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Yes, VTK_DIR was setted, but I thing that VTK is not installed correctly.
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I tried, but the generated images are not able to open.
from dicomtomesh.
@IgorDePaula try to open the CT-Scan on Slicer, export it like a DICOM and try it again. Usually works.
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@IgorDePaula I am closing this issue. Feel free to reopen it. Thx, Adrian
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