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bioawk-tutorial

bioperl-live

Core BioPerl 1.x code

cesar2.0

ensembl-compara

The Ensembl Compara Perl API and SQL schema

forwardgenomics

Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework

gc_content_in_sliding_window

Calculate GC% and GC deviation for circular genomes

genomealignmenttools

Tools for improving the sensitivity and specificity of genome alignments

hyphy

HyPhy: Hypothesis testing using Phylogenies

hyphy-gui

Desktop application for HyPhy

lightgbm

A fast, distributed, high performance gradient boosting (GBT, GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning tasks.

modeltest

Best-fit model selection

newick_utils

shell tools for processing phylogenetic trees

phylotree.js

Interactive viewer of phylogenetic trees

raxml-ng

RAxML Next Generation: faster, easier-to-use and more flexible

relax-on-cyp8b1

Analyze how gaps affect the detection of relaxed selection by 'RELAX' in terms of number of gaps, length of gaps and number of species.

seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

standard-raxml

xmr-stak-amd

Monero AMD miner