eds-bioinformatics-laboratory Goto Github PK
Name: Bioinformatics Laboratory
Type: Organization
Bio: Bioinformatics & Computational modelling
Location: Amsterdam
Bioinformatics Laboratory's Projects
assess_spatial_reconstruction_scrnaseq
asymmetricdivision
Elena Merino, Antoine van Kampen: Mafalda simulation of the germinal center. The effect of asymmetric cell division on plasma cell differentiation.
clonal_art_visualization
Rodrigo Garcia Valiente: Visual artsy representation of B-cell clonal repertoires using R
computinginr
Perry Moerland: Teaching material for the course Computing in R
encore
ENCORE: Enhancing Computational Reproducibility
encore-airrseq-template
Barbera van Schaik, Antoine van Kampen: ENCORE project for analysis for T-cell and B-cell repertoires
encore-supplement
ENCORE Supplementary Material
encore_automation
ENCORE_AUTOMATION
fss-navigator
Antoine van Kampen, Aldo Jongejan, Utkarsh Mahamune: The standardized file system structure (FSS) navigator
gc_abm_shm_network
Rodrigo García-Valiente, Elena Merino, Antoine van Kampen. ABM of the germinal center with implementation of SHM fate tree, sequence representation and PC/MBC gene network.
gc_from_affinity_to_kinetics
msm_pcdifferentiation
Elena Merino Tejero, Antoine van Kampen: Multiscale model of plasma cell differentiation
phdthesisumeshnandal
Umesh Nandal, Perry Moerland: additional files for chapters 4 and 5 of the PhD thesis of Umesh Nandal
reseda
Barbera van Schaik, Antoine van Kampen: REpertoire SEquence Data Analysis
scrnaseqvisualization
Tobias Beers, Perry Moerland: MSc Computational Science project on (hierarchical) PPCA-techniques for scRNA-seq data.
zenodo-test-bvs
Test repo to see if a release is automatically added to Zenodo
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