Comments (2)
Hello,
Thank you for bringing this to my attention. The 'bCalledGenes' flag was
recently added to CheckM and I have clearly forgotten to update the test
case to reflect this. In all likelihood, CheckM should be ready to run on
your system.
I will fix this in the next release of CheckM.
Cheers,
Donovan
On Fri, Nov 28, 2014 at 12:03 PM, S-vick [email protected] wrote:
Hi, I receive the following error when trying to run the checkm test after
installation:silas@silas-VirtualBox:~$ checkm test ~/checkm_test_results
[CheckM - Test] Processing E.coli K12-W3310 to verify operation of CheckM.
[Step 1]: Verifying tree command.
[CheckM - tree] Placing bins in reference genome tree.
Unexpected error:
Traceback (most recent call last):
File "/usr/local/bin/checkm", line 710, in
checkmParser.parseOptions(args)
File "/usr/local/lib/python2.7/dist-packages/checkm/main.py", line 1266,
in parseOptions
self.test(options)
File "/usr/local/lib/python2.7/dist-packages/checkm/main.py", line 1156,
in test
verifyEcoli.run(self, options.output_dir)
File "/usr/local/lib/python2.7/dist-packages/checkm/test/test_ecoli.py",
line 60, in run
parser.tree(options)
File "/usr/local/lib/python2.7/dist-packages/checkm/main.py", line 123, in
tree
options.bCalledGenes)
AttributeError: Options instance has no attribute 'bCalledGenes'—
Reply to this email directly or view it on GitHub
#15.
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This issue was formally addressed in v0.9.6.
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Related Issues (20)
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