missing dependencies on custom install? about checkm

[ctSkennerton]

Hi Alex,

This isn't really an issue with checkM but instead is an issue with python packaging (one of the many). When you run python setup.py it doesn't actually check that any of the dependancies are installed. Using a python package manager like pip does give you this functionality.

[accopeland]

OK, thanks.

On Thu, Nov 13, 2014 at 2:09 PM, Connor T. Skennerton <
[email protected]> wrote:

Hi Alex,

This isn't really an issue with checkM but instead is an issue with python
packaging (one of the many). When you run python setup.py it doesn't
actually check that any of the dependancies are installed. Using a python
package manager like pip does give you this functionality.

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Alex Copeland
Joint Genome Institute, Walnut Creek, CA 94598