Comments (3)
I'm not sure what would cause that error but if you're reading the file live it might change the file while you are reading it.
If it works again after restarting it's probably ok to catch the error with a try:
statement in the program and just reread the file again.
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Yeah, I did consider that, but I'd prefer fixing the issue if I could :b
I'll just try to catch the error. Thank you.
from galvani.
Maybe the following is happening:
- galvani reads the length of the data section
- EC-Lab writes extra data to the file
- galvani reads from the point where it expects the next section to be, using the outdated length information
In the case where the length of the current section is changed, the code could go back to the start of the section and reread the length. However, if change was to an earlier section then the header with the length information will also have moved. In that case I don't think there is any better solution than to go back to the start of the file and start reading again.
from galvani.
Related Issues (20)
- CI is using up too much git-lfs bandwidth HOT 4
- Read Arbin files without writing temporary database
- Column 16/17 are not readable - `Analog IN 1/V`
- BioLogic: Unexpected end of file while reading data current module: b'VMP settings HOT 1
- NotImplementedError: Column ID 174 after column time/s is unknown HOT 2
- Use contextmanagers to ensure files are closed on errors
- Add a release checklist HOT 2
- Column ID 175, 176, 177, 182, 215, 475, 478, 481, 503 unknown HOT 5
- how to find Dtype for unknown columns ? HOT 1
- more of a question than an issue, i am not seeing all of the columns that are in the data set in the output of the biologic.mprfile data HOT 5
- Not implemented error (Column ID 185) HOT 1
- Numpy 2.0.0 breaks BioLogic.MPTfile() HOT 1
- column 6 has wrong label HOT 1
- column 11 has wrong label
- Incompatibility with EC-Lab>=11.50 - BioLogic.MPRfile issue HOT 27
- Unable to read res files with mdbtools>=1.0 HOT 3
- Maintenance status + sustainability HOT 10
- Something to cite HOT 2
- OSError: Unexpected end of file while reading data might due incompatibility with EC-lab 11.50 HOT 1
- [sugestion] Get more precise start date without log module HOT 3
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