Name: EBI Variation
Type: Organization
Bio: The Variation team from EMBL-EBI develops several bioinformatics projects such as EVA, DGVa and EGA
Location: EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK, https://goo.gl/maps/xX1tn
Blog: http://www.ebi.ac.uk/about/people/thomas-keane
EBI Variation's Projects
Generic library for accessioning any type of object
AMP T2D accessioning service
Generic service for tracking files stored in different types of storage
Repository for loading already archived study metadata to new metadata API
Registry service for AMP T2D properties
Registry for nodes that belong to the network and services they provide
Automation of the AMP T2D submission process
Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics
High-Performance NoSQL database and RESTful web services to access to most relevant biological data
ClinVar Mapping and Annotation Toolkit
Service to provide synonyms of chromosome/contig identifiers
Convert between contig name convention of the same assembly
Covid-19 data portal submissions
Datastore library for querying RDBMS and NoSQL databases
EGA accessioning service
EVA non-human variant accessioning service
Automation for ingesting a new assembly for a species
EBI EVA - Common Groovy Utilities
EBI EVA - Common Python Utilities
Scripts to export EVA data and metadata to EBI search
Python utilities used for internal EVA processes
Metrics Library for collecting and storing all kinds of metrics from projects and pipelines
Tool for exporting EVA data and metadata in a format compatible with the Omics Discovery Index (http://www.omicsdi.org/)
Genomic variation pipeline for the European Variation Archive, implemented using Spring Batch
Java implementation of the sequence collection specification to represent INSDC assemblies
EVA Submission Command Line Interface for Validation
Components that connect and automate main tasks in the EVA submission workflow
Web services for EVA Submissions
Code used to to perform tasks or one of analysis.