ebi-gene-expression-group Goto Github PK
Name: EBI Gene Expression Group
Type: Organization
Name: EBI Gene Expression Group
Type: Organization
Atlas metadata and ontology mappings
Anatomogram illustrating Expression Atlas experiments
Help pages for functional genomics submissions
Atlas Prod Analysis submodule
Creates bundles for AtlasProd pipelines
Expression Atlas
Scripts used in Atlas analysis pipelines
Tools for anndata generation/ consumption for Expression Atlas
The pipeline producing bioentity annotations used in Expression Atlas searches
Ensembl annotations for Atlas
Atlas baseline meta-analysis
Gene bioentity information
New baseline export for Open Targets (although it is meant as a general purpose export)
Atlas analysis for controlled-access bulk datasets, such as EGA
Front end components of Expression Atlas and Single Cell Expression Atlas
Internal conda recipes relevant for atlas but not of general interest to be in bioconda
Common location to place our container definitions for integration with CI processes.
Generate single-cell reference dataset for deconvolution in Atlas
Experiment page for bulk Expression Atlas
This is the repo containing FAQs for both bulk and single cell expression atlas
Scripts and utilities for providing fastqs to workflows
Scripts for processing gene (or exon/ transcript) annotation
Atlas analysis for controlled-access GTEx bulk datasets
Heatmap visualizing bulk Expression Atlas data
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