dyxmvp Goto Github PK

advanced-shiny

Shiny tips & tricks for improving your apps and solving common problems

aind

alzheimers_parkinsons

Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis

asap_reproducibility

Reproducing all analyses and figures for the ASAP-seq paper

baseqdrops

A versatile and lightning fast package for processing 10X, inDrop and Drop-seq data.

bcd_nano_cutntag

beng_469_atac-seq_lab

BENG_469_ATAC-seq_lab

biscuit_singlecell_imm_icml_2016

R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.

brainchromatin

Code used to analyze single cell RNA and ATAC sequencing in developing human brain

brca_cell_atlas

Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".

cell_deform

chippipes

Pipelines for ChIP-seq / CUT&RUN / CUT&Tag etc. analysis

coding-practice

courses

dbit-seq_ffpe

This repository aims to share the R codes used in Spatial_FFPE project

deform_dll

demos

Demo collections

drop-seq

Java tools for analyzing Drop-seq data

dropest

Pipeline for initial analysis of droplet-based single-cell RNA-seq data

dropseqpipe

A SingleCell RNASeq pre-processing pipeline built on snakemake

ezsinglecell

GUI implementation for Seurat using shiny

hiplex_proteome

This is the repository for hiplex proteome sequencing project.

hippocampus

home-service-robot

incite-seq

meersetal_multi-tag

This repository contains code associated with the MulTI-Tag manuscript

nanobody

Nanobody-tethered tagmentation followed by sequencing

neat-seq_reproducibility

pyflow-chipseq

a snakemake pipeline to process ChIP-seq files from GEO or in-house

rasusa

Randomly subsample sequencing reads to a specified coverage