drvenki Goto Github PK
Name: Venkatesh Chellappa
Type: User
Company: Karolinska Institutet
Bio: Bioinformatics developer. Shell, Python, R, AWS, Spark, Singularity, Docker.
Twitter: drvenki
Location: Solna, Sweden
Venkatesh Chellappa's Projects
5pillars
Five pillars of computational reproducibility
autoseq
autoseq-doc
Documentation for autoseq pipelines and dependencies
autoseq-scripts
Helper scripts for autoseq
bioinformatics-open-course
:microscope: Path to a free self-taught education in Bioinformatics!
clinical-cancer-genomics-course
gatk3-4-rnaseq-germline-snps-indels
Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related tools
gatk_basic
A very simple and basic shell script to run GATK best practice pipeline
gfftoolkit
Extracts information from GFF and prepare them in bed format
probiowebpage
Web page files for Probio
provision
Shiny app for proteomics data analysis
python-cheatsheet
Comprehensive Python Cheatsheet
reportgen
sfg
The Simple Fool's Guide to population genomics using RNA-Seq
sketch-threejs
Interactive sketches made with three.js.
sparkgc
Spark Based Genome Compression for Large Collections of Genomes
sv-cfdna
Structural Variants in cell-free tumor DNA
svcaller
A structural variant caller
svcompare
vcfmerge
A package to merge somatic variants from multiple sources
yapf
A formatter for Python files
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