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causesims

R package for creating simulated summary statistics and testing MR methods

eqtplot

Visualization of Colocalization Between eQTL and GWAS Data

fine_mapping

This repository contains scripts used for fine-mapping GWAS locus using eQTL prioritization methods, including Summary-based Mendelian Randomization (SMR) and coloc based colocalization.

friendly2mr

get_mr

A package for running MR In batches and in parallel quickly

imagej-tutorial

Supplementary for my ImageJ Tutorial

ldblockshow

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

ldsc-corrplot-rg

corrplot of LDSC genetic correlation results

mr-forestplot

mr.cue

mr_ma

Mendelian Randomization and Mediation analysis

mr_tricks

mrlap

R package to perform two-sample Mendelian Randomisation (MR) analyses using (potentially) overlapping samples

mrsampleoverlap

Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies

mvmr.divw

dIVW and adIVW estimators for multivariable Mendelian randomization

nlmr

Non-linear Mendelian randomization

overlap

Correcting the overlapping bias in Mendelian Randomization with summary statistics

pgwas_discovery

Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"

pheweb

A tool to build a website to browse hundreds or thousands of GWAS.

plink2r_for_win

rbd_smr

Using SMR for eQTL mendelian randomization.

rnaseq-workflow

A repository for setting up a RNAseq workflow

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

rnaseqr

📊 An R package of RNA-seq workflow

single-cell-mendelian-randomization

smr

The Summary Mendelian randomization (SMR) method

twosamplemr_-for-personal-use

A fully localized set of Mendelian randomization analysis R language code for dual samples.