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ai-ml-biomed-paper-tracker

Stay ahead of the curve in BioMed research with AI & Machine Learning!

best-of-ml-python

🏆 A ranked list of awesome machine learning Python libraries. Updated weekly.

cancer_variant_db

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

caret

An R package for training and plotting classification and regression models

conch

A vision-language foundation model for computational pathology

crewai

Framework for orchestrating role-playing, autonomous AI agents. By fostering collaborative intelligence, CrewAI empowers agents to work together seamlessly, tackling complex tasks.

data-science-cheatsheets

Posit Cheat Sheets - Can also be found at https://posit.co/resources/cheatsheets/.

data.table

R's data.table package extends data.frame:

deep_learning_paper_implementations

🧑‍🏫 60 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠

gtsummary

Presentation-Ready Data Summary and Analytic Result Tables

infer

An R package for tidyverse-friendly statistical inference

marugoto

Tools to build deep learning pipelines.

moosavi.resume.io

parsnip

A tidy unified interface to models -- Max Kuhn

purrr

A functional programming toolkit for R

readme.md

HosseinMoosavi/README.md

scanpy

Single-cell analysis in Python. Scales to >1M cells.

seurat

R toolkit for single cell genomics

single-cell-best-practices

https://www.sc-best-practices.org

single-cell.resource

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

tidytuesday

tmtheme-editor

Color scheme editor for SublimeText, Textmate and a bunch of other text editors

transformers

🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

ver2

warp

WDL Analysis Research Pipelines