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adarindex-imperativesql

This repository has an implementation of the Adamic/Adar index using imperative SQL

ass7_gettingintune

Assignment 7 - embedded software developement

battleshipproject

This is the OOP group project for implementing battle ship

bioinformatics-tools

This repository contains information on how to use common bioinformatics tools.

breakfastserial

PES assignment 6

comp533_databasescraper

This is a fully functional tool for scraping the Smithsonian OpenAccess data.

coronavirus

cp-algorithms

This repo contains solutions and modifications to the algorithms on https://cp-algorithms.com/algebra/binary-exp.html

cxo-usafspring2021

The repository is focused on the MVP for the Spring class CXO-USAF cohort.

cyrano_simulations

debruijnextend

This repository contains the source code for the DebruijnExtend tool. This tool uses known secondary structures for common protein kmers to predict the most likely secondary structure. This is done using a debruijn graph approach to incorporate local homology for predicting the most probable secondary structure along a protein. Tested on mac/linux

deep_learning

This repository contains contents related to Deep Learning. This is a playground for learning deepnets, by creating several architectures and observing outcomes.

dipss

dreycey.github.io

Website

facs

Fast and Accurate Classification of Sequences using Bloom filters

fifo2ways

implimenting FIFO in 2 ways

firstgensolutions.github.io

fsm_assignment4

This is the repository for creating a finite state machine for a stop light.

graphplay

Playing around with graphs for the DNA code club

kmercatcher

This repository contains the source code for a genome2genome kmer comparison tool written in Rust.

mcmc

This repository is focused on MCMC implementation for going through a hyper cube.

pbkdf2

PBKDF2 - PES Assignment 5

phage-enrichseq

Finding phages for phage therapy using Enrichment followed by Differential Genome Amplification

phagebox

The PhageBox is a digital microfluidics device that integrates temperature and magnetic control modules at the hardware level. This repository contains the embedded software which contains a finite state machine for representing PCR and a graphical user interface for visual feedback and operation.

phagefilter

PhageFilter uses a Sequence Bloom Tree (SBT) to filter bacteriophage reads from metagenomic files.

phageone

phagescanner

A reconfigurable machine learning pipeline for labeling ORFs/proteins in bacteriophage genomes and metagenomic data.

pharokka

fast phage annotation program

scheduling_algos

smellml

SmellML is a tool that combines different code smelling tools for python into a nice, compact, push button tool.