Comments (5)
Hey Dave,
We haven't tested DeepSqueak in Octave. It is pretty complicated code, so I imagine you would run into issues. I would have liked to be completely open source with DeepSqueak, but I have been coding in Matlab so long that it was really the only option for us.
-Kevin
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Dang! A lad can always hope! I was more curious about my pet rats, than anything serious science wise.
Did you notice vocalisation changes in rats with ill health (mycoplasma etc)?
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@dpastern have to tried Octave? I did using https://flathub.org/apps/details/org.octave.Octave to get 5.x (Ubuntu gave me 4.x)
DeepSqueek.m is not runable.
>> DeepSqueak
error: 'gui_mainfcn' undefined near line 30 column 5
error: called from
DeepSqueak at line 30 column 5
Unfortunately (to me) the *.mat files (guess those are HDF5?) could not be opened due to bug/feature in Octave https://savannah.gnu.org/bugs/?45706
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Trying to read the *.mat
file(s) with python https://stackoverflow.com/questions/874461/read-mat-files-in-python#874488 has some good references.
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I'm guessing that this is because the *.mat files were all saved as v7.3, be we could probably compile it into a standalone application. I tested it on windows, and detecting and viewing files seemed to work.
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Related Issues (20)
- Spectrogram resolution adjustment feature request HOT 2
- Can't train supervised classifier HOT 2
- Need Khz grids HOT 1
- Unable to load or detect calls HOT 4
- Unable to Navigate with the Buttons HOT 2
- Classification/clustering issue (supervised and unsupervised) HOT 2
- harmonics + parameters for K means clustering HOT 1
- noise under harmonic vocalizations HOT 1
- Rate and RelBox are missing HOT 1
- Run the new DeepSqueak Version on Matlab Runtime (free - on private PC) HOT 2
- Incomplete Detection after Multidetect (WAV-Files) HOT 1
- Error in network, skiping audio chunk HOT 2
- Post Hoc Denoising problem HOT 1
- Call Feature (Slope) Explanation HOT 5
- VAE Issue HOT 2
- Output files not reporting accurate High Frequency values HOT 3
- Export to excel error HOT 5
- Error in network, skipping audio chunk (Matlab 2023b)
- Detect Calls = "Error in network, skiping audio chunk" HOT 2
- Supervised Clustering errors
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