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2018_multiband_talk

Examples from Nuts and Bolts Multiband Talk

advanced_fmri_course

List of practicals used for the fMRI data analysis course of UoB (UK) between 2014 and 2017

antsinstallexample

Simple bash script that downloads and installs ANTs in a unix environment

bids-b0-tools

Scripts, tools, and documents on creating, parsing, and working with BIDS-structured data sets.

bids2nda

A conversion tool for creating NDA compatible metadata representation from BIDS datasets.

bios8366

Advanced Statistical Computing at Vanderbilt University's Department of Biostatistics

bspm

Utility MATLAB functions and wrappers for fMRI data analysis, mostly based in SPM12

convert-eprime

Python functions to convert E-Prime files to csvs. Not currently being developed, but issues and PRs welcome!

face_morpher

:angel: Morph faces with Python, Numpy, Scipy

glmdenoise

glmsingle

A toolbox for accurate single-trial estimates in fMRI time-series data

ica-aroma

ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.

knkutils

MATLAB utility functions written by Kendrick Kay

laynii

Stand alone fMRI software suite for layer-fMRI analyses.

meica_tool

Useful for making plots from MEICA

meica_v3

Prantik Kundu's MEICA

mppca_denoise

nda-tools

Python package for interacting with NDA web services. Used to validate, submit, and download data to and from NDA.

nordic_raw

Matlab code for performing image reconstruction in MRI and performing the NORDIC denoising

osmnx-examples

Examples demonstrating the usage of OSMnx

prepair

PREPAIR is an unsupervised physiological noise correction method using magnitude and phase data instead of external recordings to identify physiological fluctuations in the brain..

presurgmapp

PreSurgMapp is a user-friendly, open souce, MATLAB toolbox for pipelined data processing with a dedicated design for individualized presurgical mapping of eloquent functional areas based on multimodal functional MRI.

pycortex

Pycortex is a python-based toolkit for surface visualization of fMRI data

snippets

Short and Useful code

statistical-parametric-helper

Matlab code to make subject batch processing, artifact removal and other tedious jobs in SPM (Statistical Parametric Mapping) much, much easier.

tdm

Temporal Decomposition through Manifold Fitting

tedana

TE-dependent analysis of multi-echo fMRI

translators