Comments (2)
As of now Chimera and PyMol can both open the ensemble file, so I guess it was linked to #38. But the question remains how strict to be on validating of models, so do HETATMs also need to correspond to each other
from pdbtbx.
Based on the file format definition (v3.30) also the HETATMs should correspond, but I have seen examples where this is not the case. So I would propose to issue a LooseWarning
when finding HETATMs that do not correspond.
This record is used only when more than one model appears in an entry. Generally, it is
employed mainly for NMR structures. The chemical connectivity should be the same for each
model. ATOM, HETATM, ANISOU, and TER records for each model structure and are
interspersed as needed between MODEL and ENDMDL records.
from pdbtbx.
Related Issues (20)
- Support pdbML HOT 2
- Add SASA support HOT 14
- Panic in `save/pdb.rs:517:29` at `Option::unwrap()` on a `None` value HOT 3
- Issues with `remove_models_except` implementation HOT 2
- Crates.io new version Request HOT 1
- Bad handling of PDB files containing mixed upper and lower case chains HOT 3
- Maybe make a Discord? HOT 2
- Bad Models in PDB HOT 1
- ReadOptions
- Utilities? HOT 6
- REMARK Line Length Enforcement HOT 2
- Fall back strategy for headerless PDB files. HOT 2
- Read option to only parse `ATOM` records HOT 5
- Finish implementing the `ReadOptions`
- Customize `StrictnessLevel` HOT 9
- Refactor long functions
- Check memory footprint
- Panic while parsing HOT 3
- Unable to load poor-quality PDBs HOT 6
- Allow for the use of compressed files HOT 4
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from pdbtbx.