dongshuyan / pdb2fasta

change format from pdb to fasta .python file change from https://gist.github.com/jameslyons/00cad4f1ab6a49c2b3df .And C++ file is written by myself.

pdb

change format from pdb to fasta . python file change from https://gist.github.com/jameslyons/00cad4f1ab6a49c2b3df .(There is a mistake when i use it, so i change it) And C++ file is written by myself.

For pdb2fasta.py

an example: in bash python pdb2fasta.py sa.pdb > sa.fa
(if your original file is sa.pdb and your target file is sa.fa)

For pdb2fasta_file.py

python pdb2fasta_file.py sa.pdb

and it will produce sa.fasta automatically.

For pdb2fasta.cpp

if your original file to be in.pdb and your target file will be out.fa

pdb2fasta's Issues

Maybe could merge two .py files

By using argparse and built-in sys and maybe setuptools, we can generalize the scripts more and provide more options on converting.
I'm going to fork this project and try myself first. Thanks!