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banyan

bayesgo

bayesGO: Bayesian ontology fingerprint, a statistical framework for biomedical literature mining

chunglab_binary_packages

Chung lab software repository: Binary R packages and datasets

dpeak

High resolution identification of protein binding sites using PET and SET ChIP-Seq and ChIP-exo data

ggpa

graph-GPA: A graphical model for prioritizing GWAS results and investigating pleiotropic architecture

ggpa2

graph-GPA 2.0: A Graphical Model for Multi-disease Analysis of GWAS Results with Integration of Functional Annotation Data

gpa

GPA: Genetic analysis incorporating Pleiotropy and Annotation

gpa_binary

GPA Suite: Binary R packages and Datasets

gpatree

initial desc

hubviz

hubViz: A Novel Tool for Hub-centric Visualization

ingrid

InGRiD (Integrative Genomics Robust iDentification of cancer)

learnr

Resources to learn R

mosaics

MOdel-based one and two Sample Analysis and Inference for ChIP-Seq

nirm

Network Item Response Model

palmer

PALMER: A Constrained Biclustering Algorithm to Improve Pathway Annotation Based on the Biomedical Literature Mining

pathclust

pathclust: Pathway-guided identification of cancer subtypes

pics

R Package "InGRiD": Integrative Genomics Robust iDentification of cancer subgroups

pics0

PICS: Pathway-Guided Identification of Cancer Subgroups