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abdockgen

ablang

AbLang: A language model for antibodies

abnumber

Convenience Python APIs for antibody numbering using ANARCI

absolut

Unconstrained lattice antibody-antigen bindings generator

advanced-deep-learning-with-keras

Advanced Deep Learning with Keras, published by Packt

ai-expert-roadmap

Roadmap to becoming an Artificial Intelligence Expert in 2022

alphafold

Open source code for AlphaFold.

alphafold2-pytorch

alphafold_finetune

Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions

ankh

Ankh: Optimized Protein Language Model

annotated_deep_learning_paper_implementations

🧑‍🏫 59 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠

awesome

😎 Awesome lists about all kinds of interesting topics

awesome-computer-vision

A curated list of awesome computer vision resources

awesome-diffusion-models

A collection of resources and papers on Diffusion Models

awesome-drug-discovery-knowledge-graphs

A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of biomedical datasets relating to drug discovery: a knowledge graph perspective" (Briefings in Bioinformatics, 2022)

awesome-equivariant-network

Paper list for equivariant neural network

awesome-neural-geometry

A curated collection of resources and research related to the geometry of representations in the brain, deep networks, and beyond

awesome-normalizing-flows

Awesome resources on normalizing flows.

awesome-self-supervised-learning

A curated list of awesome self-supervised methods

awesome-tnns

awesome-transformer-attention

An ultimately comprehensive paper list of Vision Transformer/Attention, including papers, codes, and related websites

awesome-transformers

A curated list of awesome transformer models.

bayesian-machine-learning

Notebooks about Bayesian methods for machine learning

benchmark_vae

Unifying Generative Autoencoder implementations in Python

bilstm-attention_cn_text_clf_pytorch

BiLSTM 加普通Attention中文文本多分类Pytorch实现

bilstm_crf_keras_ner

bio-diffusion

A PyTorch hub of denoising diffusion probabilistic models designed to generate novel biological data

biochemical-lms-for-drug-design

Code for the paper "Exploiting Pretrained Biochemical Language Models for Targeted Drug Design", to appear in Bioinformatics, Proceedings of ECCB2022.

biogpt

biophi

BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody sequence design.