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donaldlab's Projects
bwm
This repository contains code from the following publication: Jou JD, Jain S, Georgiev I, Donald BR. BWM*: A novel, provable ensemble- based dynamic programming algorithm for sparse approximations of computational protein design. J Comput Biol. 2016. For the latest version of OSPREY, please try http://www.cs.duke.edu/donaldlab/osprey.php instead.
cdio
jpype-py2
A Python-Java bridge focusing on stability for Python 2.7
libprotnmr
markstar_benchmarks
molscope
A flexible and attractive molecular viewer for JVM applications.
osprey-gui
A cross-platform GUI for OSPREY 3
osprey-service
A web service to support the Osprey GUI
osprey2
Open Source Protein REdesign for You
osprey3
Open Source Protein REdesign for You v3
osprey_3_paper
Paper about OSPREY 3
osprey_sparseastar
This repository contains code used in the following publication: Jain S, Jou JD, Georgiev IS, and Donald BR. A Critical Analysis of Computational Protein Design with Sparse Residue Interaction Graphs. PLoS Comp Biol. 2017, In press. For the latest version of OSPREY, please try http://www.cs.duke.edu/donaldlab/osprey.php instead.
protein-interaction-viewer
Show probe contact dots within PyMol
proteindesignplugin
resistor
Computational Resistance Mutation Prediction using K*, mutational signatures, and Pareto optimization
tpie-java
glue code to use TPIE in Java projects
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