Related Issues (20)
- Either drop Picard altogether, or clean the code up HOT 1
- Add test-bams
- CI: Deploy container to registry
- Deploy container to Github Registry
- Fix compression parameter logic
- Implement CI
- Improve CI
- Update to biobambam 2.0.177+ HOT 1
- Set job names (LSF) HOT 1
- CRAM input support
- Create container-definitions
- CircleCI seemst to fail first time on new branch
- Fix Singularity container startup HOT 1
- `reuse` for license management
- Unaligned single-end CRAM output
- Unaligned interleaved CRAM output
- Migrate to DSL2
- Singularity ignored, if "lsf" profile is used
- Turning on tracing with singularity reports missing `ps` command
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