Related Issues (20)
- Process data from object storage
- Add for-loop to waitForRegisteredPids
- Switch PID registry to associative array
- Move Bash library code to DefaultPlugin or own repo HOT 1
- Add collected ambiguously classified undirected WGBS reads in QC-JSON
- Allow setting the number of bases at read start that should should be ignored for conversion statistics
- Merge without duplication marking
- Better IO checks in Perl scripts
- Tagmentation WGS and WES
- Calculate target region size from TARGET_REGION_FILE
- _de novo_ adapter detection HOT 1
- Lift methylation meta job to WFMS level
- Filename length restriction in R diffchrom script HOT 2
- Check wait -n for task management in bash code
- bwa-mem2 support
- Move fingerprinting into pipeline
- Add bwa-postalt.js to WGBS bwa job
- Remove the biobambam sort option
- Get fingerprinting to work with ALT-contig reference
- `.DepthOfCoverage_Target.txt` has odd output
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