Comments (4)
Hi Bill, thanks! It's been a while since I've looked at this code, and at the time (2018) I was guessing at the metadata, and before I knew about your CatGT and TPrime.
Can you unpack what you mean by misspell here? What were you doing to generate a new metadata file? Were you running a processing pipeline like this https://djoshea.github.io/neuropixel-utils/imec_dataset/#modifying-a-dataset-during-copy-to-new-location
I think in the call to writeModifiedAPMeta, these are the three fields that I prefix the fields with a tilde because that's how they appear in my .{band}.meta files, and stripping the tilde led to errors with other tools.
neuropixel-utils/+Neuropixel/ImecDataset.m
Line 1907 in 6a80b45
What are the fields supposed to be? What is the correct output? Thanks!
from neuropixel-utils.
The tilde is required. I am reacting to a bug report about a CatGT crash that I got from a user. The cause was metadata created by neuropixel-utils where the tilde character was absent. I've now looked at your code and it does appear to explicitly add a tilde for those items, though I have never run/tested your code myself. I am guessing that the user's version predates this. If the tilde is present in current code you can close the issue. Thanks for checking this out.
from neuropixel-utils.
Ah, okay. Looks like I fixed this in 2021 ae56e18
Please send the user my way if it's not fixed by a pull and I can help track down the issue.
Wish I'd known of the full complement of tools you'd written when I started writing my toolkit! Thanks!
from neuropixel-utils.
I am that user, and I'm just about to dig into things when you guys already resolved it. That's impressive. Thanks everyone!
Just in case someone else searched for this, adding 3 tildes (~) before the imroTbl, snsChanMap, snsShankMap entry in the modified metafile is sufficient to restore CatGT functionality.
from neuropixel-utils.
Related Issues (13)
- Common setup can erase raw data HOT 2
- System requirements? HOT 6
- turbo colormap not included HOT 2
- error on loading and working with kilosort dataset HOT 2
- Outdated function reference? HOT 1
- meta.snsShankMap may not be available if only writing lf.bin
- Error while loading binaries from SpikeGLX (Release v.20190327) - port numbers on imec PXI card HOT 1
- Issue with concatenating LF HOT 2
- typo in function name
- Error loading an imec Dataset , .imec..bin gets added to filename HOT 7
- error while trying to exclude specific time window HOT 1
- Missing link in imec_dataset GH page
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from neuropixel-utils.