Comments (2)
dizak
commented on July 2, 2024
As all the packages - except for xlrd which does not have the __version__ variable defined - have their versions specified and the build passes - it is time to find out which package causes the problem. The most likely is pandas as the errors apply to the wrong number of columns and/or faulty values. Moreover, v0.24 was released at 25.01 which is about the time things broke.
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dizak
commented on July 2, 2024
It seems everything works fine for pandas<=0.23. The build passes for all the python versions except for 3.4 which seems unsupported by pandas below v0.22. Congruent with a fact that this was the only python version that had no problem when the version number was not specified.
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Related Issues (20)
- v0.0.3
- __version__ unchanged
- Pass urls directly to pandas
- Detailed option for dropping duplicates ```prwlr.apis.get_org_db_X_ref```
- Drop or do not drop duplicates in profiling functions
- Allow error supression HOT 1
- Add convenience function for profiles shuffle HOT 2
- No multithreading no effect in get_KOs_db_X_ref
- Low code quality HOT 1
- There is a problem with documentation. It is just wrong!
- Remove email notifications of travis builds HOT 1
- Args passing on convenience functions
- E-mail notification for [email protected]
- Still there is a problem with documentation
- Allow ORFs subset in prwlr.databases.parse_organism_info
- Indicate clearly profiles query is sorted
- Fix type on the project page
- v0.0.4
- Docs typo
- The prwlr doesn't provide gene names of the orthologous genes imported from KEGG database.
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