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abba_baba_allelefreq

calculate D statistics using allele frequencies

admixture_scripts

scripts to convert to ped format from vcf and quality of life script to run admixture

admixtureinr

A package to convert vcf to ped and run Admixture in R and plot results, tutorial can be found here:

assembly_using_stacks2

convert_vcf_to_indseqsnp_diyabc

A script to convert a vcf file format file with NGS derived SNPs to the input format IndSeq SNP required for DIYABC.

demultiplexing

set of scripts and files to accomplish a RADseq demultiplexing

enm-using-biomod2

Tutorial for environmental niche modelling using BIOMOD2

enmtools

ENMTools R Package

extract_locusid_vcf

A script to extract locus IDs from vcfs produced by populations when using a vcf file as input

fsc2_tutorial

Tutorial to using FastSimCoal2 for model testing

path8d_to_ultrametric

pca_plotting

R script to calculate principal components and plot them in R

pca_plotting2

A script to calculate and plot principal components

piechartmap

A set of scripts to calculate average admixture ratio for each population, then plot the admixture ratio as a pie chart on a map

plot_koppen_geiger

An R script that can be used to plot köppen geiger raster layer from CHELSA

plot_multi-panel_pca

plot_piechart_and_barplot_snmf

snmf_tess3_in_r

Analysing population structure using sNMF or TESS3 in R

syntheticreferencepipeline

A pipeline to create a synthetic reference from a denovo catalog of loci

tutorial_splitstree_4

Tutorial to making neighbor-joining and neighbor-net trees with Splitstree 4