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auto-fill_horarios

fill tedious register horarios with one line

bigtree

Tree Implementation for Python, integrated with Python list, dictionary, and pandas DataFrame.

biom-format

The Biological Observation Matrix (BIOM) Format Project

coursera_web

Coursera course of HTML, CSS, and Javascript for Web Developers

datasciencecoursera

datasciencecoursera

datasharing

The Leek group guide to data sharing

dj_gmgc

eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

empress

A fast and scalable phylogenetic tree viewer for microbiome data analysis

esmfold_playgroud

just to play esmfold

ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

ete-data

Data files to use with the ETE Toolkit

ete3_tutorial_chinese

ete4-build

ete4-build with nextflow

ete4-explore

ete4 explore to generate tree img

ete4_gallery

ete_genomiccontext

ete_gui

a web-based GUI application of etetoolkit

export2graphlan

Conversion software tool for producing both annotation and tree files for GraPhlAn

foldseek

Foldseek enables fast and sensitive comparisons of large structure sets.

gtdb-id-convertor

convert GCA id to GCF id in GTDB

gtdb_to_taxdump

Convert GTDB taxonomy to NCBI taxdump format

gtotree

A user-friendly workflow for phylogenomics

kinase_peptide_modelling

This is the pipeline to model docking peptides to protein kinase binding pocket.

maple

MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.

mybioinformatics

ngphylogeny-django

ngs-study

opentree

Opentree browsing and curation web site. For overarching or cross-repo concerns, please see the 'germinator' repo.

pastml

Ancestral character reconstruction and visualisation for rooted phylogenetic trees