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2021_oss_test

2022fall_41class_team2

SWE2022-Fall Team 2

alignment-and-variant-calling-tutorial

basic walk-throughs for alignment and variant calling from NGS sequencing data

alphafold

Open source code for AlphaFold.

alphafold-analyser

A tool to visualise the results of AlphaFold2 and inspect the quality of structural predictions

autoeq

Automatic headphone equalization from frequency responses

awesome-genome-visualization

A list of interesting genome browser or genome-browser-like implementations

awesome-production-machine-learning

A curated list of awesome open source libraries to deploy, monitor, version and scale your machine learning

barcode-generator

bioactivity-prediction-app

bioinformatics_freecodecamp

biopython

Official git repository for Biopython (originally converted from CVS)

book

brew

🍺 The missing package manager for macOS (or Linux)

chatgpt-google-extension

This project is deprecated. Check my new project ChatHub: (for studying extension structure)

clustalo-python

A Python wrapper around Clustal Omega (http://www.clustal.org/omega/)

crispr_toolkit

CRISPR Indel, base edit analysis

d2l-en

Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 300 universities from 55 countries including Stanford, MIT, Harvard, and Cambridge.

data-science-from-scratch

code for Data Science From Scratch book

deepcpf1_torch_public

deeplearningexamples

Deep Learning Examples

dlfs_code

Code for the book Deep Learning From Scratch, from O'Reilly September 2019

eca-bioinf-handbook

Lecture notes/book in progress on computing for conservation genomics

enrichment_screen

extractor_skkuge

firacode

Monospaced font with programming ligatures

gatk

Official code repository for GATK versions 4 and up

genomelib_gen

geostab

gitignore

A collection of useful .gitignore templates