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Problem installing pyBigWig about pybigwig HOT 6 CLOSED

deeptools avatar deeptools commented on August 16, 2024
Problem installing pyBigWig

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Comments (6)

dpryan79 avatar dpryan79 commented on August 16, 2024

I've not tried compiling with clang on a Mac, I'll give that a try today and post an updated version.

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dpryan79 avatar dpryan79 commented on August 16, 2024

I've just posted version 1.0.5 to pypi (and github). That fixes this problem on the OSX system that I just tested on. Can you try and let me know if this is resolved?

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dpryan79 avatar dpryan79 commented on August 16, 2024

Actually, try 1.0.6, which fixes another odd issue that happened on my OSX test system. BTW, thanks for making me test this on OSX 👍 :)

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dav7mx avatar dav7mx commented on August 16, 2024

Done! 1.0.6 installed without problem! Thanks :)

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dav7mx avatar dav7mx commented on August 16, 2024

Well, it installed correctly but no I'm getting an error while I import it:

>>> import pyBigWig
Fatal Python error: PyThreadState_Get: no current thread
Abort trap: 6

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dpryan79 avatar dpryan79 commented on August 16, 2024

That happens if you install with one python and then try to import with another. Presumably you're using macports or homebrew for one step and then the system python for another. Particularly on a Mac, always try to just use one python.

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