Comments (6)
I've not tried compiling with clang on a Mac, I'll give that a try today and post an updated version.
from pybigwig.
I've just posted version 1.0.5 to pypi (and github). That fixes this problem on the OSX system that I just tested on. Can you try and let me know if this is resolved?
from pybigwig.
Actually, try 1.0.6, which fixes another odd issue that happened on my OSX test system. BTW, thanks for making me test this on OSX 👍 :)
from pybigwig.
Done! 1.0.6 installed without problem! Thanks :)
from pybigwig.
Well, it installed correctly but no I'm getting an error while I import it:
>>> import pyBigWig
Fatal Python error: PyThreadState_Get: no current thread
Abort trap: 6
from pybigwig.
That happens if you install with one python and then try to import with another. Presumably you're using macports or homebrew for one step and then the system python for another. Particularly on a Mac, always try to just use one python.
from pybigwig.
Related Issues (20)
- RuntimeError: Invalid interval bounds
- Document performance considerations? HOT 4
- Cannot add entries of value type int, but only float HOT 2
- support for osx-arm64 HOT 2
- numpy support broken in 0.3.18? HOT 1
- Create a BedGraph file using addEntries() throws segmentation fault HOT 2
- library import error HOT 4
- pyBigWig fails to find numpy installation when installing from PyPI HOT 5
- Writing a nan value should leave a gap HOT 7
- Can't enforce numpy features when pyBigWig is used as a dependency in downstream package HOT 5
- pip installation broken HOT 4
- Installing through pip not working HOT 9
- addHeader does not support multiple calls HOT 1
- Support for python >=3.11 HOT 1
- Issue Downloading pyBigWig HOT 1
- Simple patch to resolve conflict with roundup() macro
- Stats Sum Not Working as Expected
- 'zsh: segmentation fault ' HOT 1
- Out of memory listing entries on one human chromosome on a machine with 300 GB ram and 165 GB BigBed file HOT 1
- pyBigWig.entries() should return empty array, not None when no entries are found
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from pybigwig.