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bloptest

Testing non-linear optimization algorithms for branch lengths optimization

bomp

Parallel Boyer Moore algorithm

ddarriba.github.io

ddrad-seq

examl

Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI

foreseqs

Forecasing Sequences for multigene alignments

jmodeltest2

Automatically exported from code.google.com/p/jmodeltest2

mips_sim

MIPS simulator

modeltest

Best-fit model selection

mpi-tutorial

mpi-tutorial

partitiontest

Automatically exported from code.google.com/p/partitiontest

pll-dppdiv

High performance tool for estimating species divergence times and lineage-specific substitution rates on a fixed topology

pll-modules

High Level modules for the Low Level Phylogenetic Likelihood Library

ppa

Advanced Parallel Programming

prottest3

Automatically exported from code.google.com/p/prottest3

randomstuff

Random Stuff

test-modsel

treechar

TreeChar is a tool for characterizing the phylogenetic tree space. Maximum-Likelihood heuristic makes assumptions on the phylogenetic tree space. However, little is known about the effect of the data characteristics on the likelihood surface, as long as it is usually not feasible to evaluate the whole tree space, which grows exponentially with the number of taxa.