Related Issues (20)
- Try HDF5 save format for faster model load HOT 3
- Migrate to gs-fastcopy
- Change benchmark.py to new schema HOT 1
- Bring multi-step to parity with benchmark.py HOT 1
- Bug: run-job scripts using wrong container tag
- Log entries are duplicated
- Add script to run DeepCell with QuPath conventions HOT 5
- Add a Teams-formatted webhook call on pipeline success HOT 3
- Add parameter for batch job configuration
- Need to thread compartment through parameters
- Add benchmark for serial smart_open vs parallel gs_fastcopy transfers HOT 1
- Create job that processes multiple inputs HOT 1
- Create job that runs qupath creation script on a dataset root HOT 6
- Create qupath initializer job-runner that runs creation dependent on prediction HOT 1
- Add benchmark for just gs_fastcopy
- Add user-project parameters to storage interactions
- Split tiff output by compartment
- Recreate StringIO on each BQ upload try
- Increase boot disk size based on input size
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