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100-days-of-ml-code

100 Days of ML Coding

13_questions_of_shell

shell十三问--shell教程（markdown 版本）

ads1-notebooks

Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing

ads1-slides

Slides for Algorithms for DNA Sequencing Coursera class

all-of-statistics

Self-study on Larry Wasserman's "All of Statistics"

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2020

arpir

Automatic RNA-Seq Pipelines with Interactive Report

awesome-long-reads

tools and notes for long reads analysis

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

basecloud

Base R/python/etc. internal OpenStack cloud setup for Teichlab

bi-be-cs-183-2023

Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023

bioinformatics-one-liners

Bioinformatics one liners from Ming Tang

blacklist

Application for making ENCODE Blacklists

blowfish

Personal Website & Blog Theme for Hugo

cc-linear-mixed-models

Introduction to linear mixed models

cellhint

A tool for semi-automatic cell type harmonization and integration

celloseq

Transposable element expression at unique loci in single cells with CELLO-seq

chang_et_al_zebrafish_tes

chip-seq-analysis

ChIP-seq analysis notes from Tommy Tang

cholera

R Package for Analyzing John Snow's 1854 Cholera Map

circle-map

A method for circular DNA detection based on probabilistic mapping of ultrashort reads

circle_finder

Micro DNA identification

cna

Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-cell datasets.

compound-sne

computational-discovery-on-jupyter

Computational Discovery on Jupyter Open Educational Resource by Neil J. Calkin, Eunice Y. S. Chan, and Robert M. Corless

dash-sample-apps

Apps hosted in the Dash Gallery

data-analysis

Data Science Using Python

datavisguide

Introductory guide to the art and science of data visualisation. Insights, advice, and examples (with code) to make data outputs more readable, accessible, and impactful.

dbrg77.github.io

doit

A clean, elegant and advanced blog theme for Hugo.