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annotated_deep_learning_paper_implementations

🧑‍🏫 60 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠

awesome-single-cell

List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

awesome_lists

Awesome Lists for Tenure-Track Assistant Professors and PhD students. (助理教授/博士生生存指南)

awsome-gnn-papers

bavaria

Batch-adversarial variational auto-encoder (BAVARIA) for simultaneous dimensionality reduction and integration of single-cell ATAC-seq datasets

bioinformatic_tutorial

生物信息学相关的教程

chatgpt_academic

科研工作专用ChatGPT/GLM拓展，特别优化学术Paper润色体验，模块化设计支持自定义快捷按钮&函数插件，支持代码块表格显示，Tex公式双显示，新增Python和C++项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持gpt-3.5/gpt-4/chatglm

chromograph

Camiel's scATAC-seq analysis pipeline

cindm

[ICLR24] CinDM uses compositional generative models to design boundaries and initial states significantly more complex than the ones seen in training for physical simulation

dbinary

dbinary.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

dbinary1.github.io

deep-learning-papers-reading-roadmap

Deep Learning papers reading roadmap for anyone who are eager to learn this amazing tech!

deephypergraph

A pytorch library for graph and hypergraph computation.

deeplearning

Python for《Deep Learning》，该书为《深度学习》(花书) 数学推导、原理剖析与源码级别代码实现

doulabrotation_2023

This repository was used to contain the tutorials of telemere length calculation for single cell DNA-seq data.

epiverse

Epiverse is the fundamental package for single cell Assay for Transposase-Accessible Chromatin using sequencing (scATAC-seq) with Python.

fetal_brain_multiomics

Supplementary files and notebooks to recreate figures.

fun-rec

推荐系统入门教程，在线阅读地址：https://datawhalechina.github.io/fun-rec/

gastric_scrna

This repository stores the code I used for analyzing scRNA seq of Helicobacter pylori infection

gbm_spatial

manuscript-templates

LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.

mfi

omicverse

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

omicverse-reproducibility

Reproducibility of results/figures from omicverse paper

openbiomed

pycomplexheatmap

PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)

retinoblastoma_analysis

This repository contains all the codes currently used in the retinoblastoma analysis.

scltnn

A composite regression neural network for latent timing prediction of single-cell RNA-seq data

single-cell-papers-with-code

Papers with code for single cell related papers