Comments (1)
I had the same problem, and it took a while to find a way to resolve this.
After activating the environment, run the following command to change the platform architecture (osx-64 instead of osx-arm64) for the environment you are using. As far as I understood, it is a compatibility issue of a sort.
conda activate env
conda config --env --set subdir osx-64
Hope this helps.
from orthofinder.
Related Issues (20)
- "Invalid escape sequence" errors while starting OrthoFinder HOT 1
- Hello! I have 11 .faa files in a folder. I ran orthofinder -d -f /public/home/newfasta -t 64 -o output_orthofinder. But after 13-14 minutes process failed. There is no error. I opened slurm.out file then checked. there was written like below. HOT 1
- total identical sequences clustered into one orthogroup, but the topology of gene tree divided into multiple clades HOT 1
- Species tree make_ultrameric.py not working HOT 1
- [Possible Bug] The `-og` option doesn't stop after inferring orthogroups HOT 1
- [Feature Request] Allow for passing options to Diamond and other dependencies HOT 1
- Single copy orthologs (SCO) are not being generated HOT 1
- not an issue, clarification wanted for which sequences are represented in orthogroups HOT 4
- what is the Orthogroup column in N*.tsv? HOT 1
- Question_process_Orthofinder HOT 2
- issue with running Orthofinder HOT 2
- HIV teste 1 HOT 4
- About -a option: using pre-computed BLAST results does not increase the number of orthofinder threads HOT 1
- Option to start Orthofinder at stage of inferring trees from MSAs? HOT 1
- header changed in MSA
- Diamond stuck on "Running diamond all-versus-all" HOT 1
- Option to stop Orthofinder after building the species tree? HOT 2
- Running OrthoFinder with Large Species Set (>2k) and Skipping GeneTree Construction HOT 2
- disagreement between OrthologuesStats_one-to-one.tsv and Orthogroups.GeneCount.tsv HOT 6
- Inferring remaining multiple sequence alignments and gene trees——This step has been stuck for ten days HOT 3
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from orthofinder.