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content_test

data-analysis

Python/R scripts used in data analysis

dl-svg

Javascript for downloading an svg element as a .svg file.

ec2-nginx-bottle-redis

Scripts and config files to setup a AWS EC2 instance with nginx, bottle.py and redis

fray

A two player match-3 game

gene-ontology-visualization

Visualization of gene ontology as a graph structure using D3.js

intervaltree

Interval tree implemented in python with querying in python and javascript

lazygrid

Javascript grid display that lazy loads data

life

A game of life implemented in javascript with react.js

misc-analysis

mlig-regeneration-transcriptome

ipython notebooks for the m. lignano regeneration transcriptome

ngsdata-download

Download NGS data from NCBI via aspera connect and fetch XML information for NGS runs with e-utils

phaw_genome

IPython notebooks for the assembly and analysis of the Parhyale hawaiensis genome

planarian-genomes

Assembly of G.tigrina and D.japonica

planarian-regeneration-transcriptomics

Supplemental scripts used in the planarian regeneration publication. Also includes additional scripts for thesis.

scubat2

seeker

A suite of javascript apps for visualizing sequencing data

sequitur

smed-neoblast-analysis

IPython notebook for analysis of various planarian neoblast datasets

smed-strain-variant

Variant analysis of different smed lab lines around the world

trinity-visualization

Visualizing component graphs from Trinity output