dadrasarmin Goto Github PK

agar.io

My second project for the advanced programming course - Agar.io is a game that has server side and client side implemented in c++ and Qt framework

annotation-workshop-2022

augustus

Genome annotation with AUGUSTUS

enrichment_analysis_for_non_model_organism

In this repo, I explain how can we use clusterProfiler and Tidyverse to perform (GO or KEGG) enrichment analysis in R.

esp_prediction_function

high-throughput_blast

Here, I explain how to parallelize sequence similarity search using blast (or anything similar), if you have access to HPC or a big computer.

minimal-chatroom

My first project for the advanced programming course - a minimal chatroom that has server side and client side implemented in c++ and Qt framework

minos

The labyrinth king judges your gene models.

orthofinder

Phylogenetic orthology inference for comparative genomics

orthofinder_hpc_gwdg

A protocol to use Orthofinder on HPC provided by GWDG.

rcfgl

C/Python implementation of Rapid CFGL

response_to_a_gradient_of_environmental_cues_in_mesotaenium_endlicherianum

In this repository we deployed the codes we used to perform bioinformatic analyses for the paper "Response_to_a_gradient_of_environmental_cues_in_mesotaenium_endlicherianum"

rnaseq_quantification_kallisto_pipeline

This it the pipeline I use frequently to perform QC, filtering and trimming, and quantification of raw RNA-Seq reads.

stress-profiling-shiny-app

This is the interactive shiny app I developed to communicate the results of our research published here: Rieseberg, Tim Philip, et al. "Time-resolved oxidative signal convergence across the algae–embryophyte divide" bioRxiv (2024).

swing

Sliding Window Inference for Network Generation

tutorial_local_blast

In this repo, you learn how to setup blast and perform local blast based on your personal or public database.