cyverseuk Goto Github PK
Name: CyVerse UK
Type: Organization
Bio: CyVerse UK
Location: Earlham Institute, Norwich
Blog: http://www.cyverseuk.org
CyVerse UK's Projects
ansible_plays
beast
Agave Docker app for BEAST phylo package
beast2
Beast 2 agave & docker package
bedtools
blast
blast docker image and cyverse integration
blastapp
bowtie2
btrim
concatenate_files
cufflinks
cut_columns
cutadapt
cyverse_website
cyverseone
OpenNebula web api to instantiate services from CyVerse UK infrastructure
cyverseuk-util
A collection of scripts for the cyverse UK clusters
documentation
Wiki of CyVerseUK project. Tutorials and overview of technologies.
emblebi-ena-submit
Docker build to submit to the EMBL-EBI ENA
fastq-dump
gwasser
Dockerized Agave app for GWASSER, an R script for simple gwassing.
kallisto
mikado
Docker image and JSON files for CyverseUK for Mikado, a lightweight Python3 pipeline to identify the most useful or “best” set of transcripts from multiple transcript assemblies
mrbayes
MrBayes app w/docker & mpi
muscle
ncbi_sra_import
ocsi
ontologizer
polymarker
Dockerized Agave app for Polymarker, a SNP assay development pipeline
polymarker_wheat
polymarker image with wheat genome
portcullis
portcullis tool by Dan Mapleson - https://github.com/maplesond/portcullis
raxml
RAxML agave app and docker image
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