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cynthia1012's Projects

awesome-single-cell icon awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

celery-learning icon celery-learning

慕课网课程《Python 异步任务队列 Celery 使用》代码Repo

cpc2_standalone icon cpc2_standalone

Official repo for the standalone package of Coding Potential Calculator (CPC) 2.

cpgen icon cpgen

Parallel Genomic evaluations in R

data_ssgblup icon data_ssgblup

This repository contains data used as examples in the paper entitled "Single-step genomic evaluations from theory to practice: using SNP chips and sequence data in blupf90" from Lourenco et al. (2020)

g2p icon g2p

G2P is an integrated genomic selection (GS) package for predicting phenotypes from genotypes. It includes 15 GS algorithms and 13 evaluation measurements.

gsca icon gsca

An integrated genomic and immunogenomic web-based platform for gene set cancer research

hisat2 icon hisat2

Graph-based alignment (Hierarchical Graph FM index)

imooc-django icon imooc-django

高仿慕课网:py3.5 + Django1.10 + xadmin 搭建的在线课程教育平台

kraken2 icon kraken2

The second version of the Kraken taxonomic sequence classification system

metax icon metax

metaX: a flexible and comprehensive software for processing omics data.

picard icon picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

rna-seq icon rna-seq

A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample

seqbreed icon seqbreed

A python tool to evaluate genomic prediction in complex scenarios

styleguide icon styleguide

Style guides for Google-originated open-source projects

wdl icon wdl

Workflow Description Language - Specification and Implementations

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